Bioconductor Gage package

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R gage package rnaseq pathview

7.8 years ago • updated 7.7 years ago joanito.liberti • 0

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kegg geneset genelist gage package

updated 6.7 years ago by Gordon Smyth 50k • written 6.7 years ago by sup230 ▴ 30

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gage gage package pathview rna-seq

updated 2.2 years ago by Helen • 0 • written 6.2 years ago by tarun2 • 0

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gage package error

updated 6.0 years ago by James W. MacDonald 65k • written 6.0 years ago by Miskey, Csaba ▴ 20

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gage gage package gene expression matrix gene set analysis

5.8 years ago atakanekiz ▴ 30

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gage gage package

updated 7.5 years ago by Luo Weijun ★ 1.6k • written 7.6 years ago by Michael • 0

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gage package gage

5.8 years ago melkile26 • 0

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gage package path.ids RNA-Seq

7.8 years ago rl1385 • 0

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gage package deseq2

6.8 years ago sup230 ▴ 30

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

7.9 years ago smt8n • 0

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Comment: Create protein sequences including variants from a VCF file by Yun • 0

This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object

Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0

Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k

FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…

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Comment: How to correctly adjust for gender in edgeR

Create protein sequences including variants from a VCF file

A: DEXSeq design formula

Answer: SGSeq: moving toward diffex from SGSeq analysis

Answer: How to design DEXSeq formula for multiple variables

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